PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019634-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SRS
Protein Properties Length: 329aa    MW: 36477.1 Da    PI: 6.9115
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019634-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.62.2e-66952584154
              DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkrel.... 78 
                         g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a++++ + +             +         +    
  WALNUT_00019634-RA  95 GGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTALQQQIQPHDqqheqdqhqeqqQ---------Qlrgd 176
                         789*************************************************9999877554443444444433330.........14555 PP

              DUF702  79 ........kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                 k+  ++ l++t++++++s   le  ++P+ev+s+avfrcvrvs+++d +e++aYqtav+igGhvfkGiLydqG ++
  WALNUT_00019634-RA 177 npkrqqrdKQLGAAPLACTRIPNTTSG--LELGQFPAEVNSPAVFRCVRVSAMEDPDEQYAYQTAVNIGGHVFKGILYDQGRDD 258
                         555443325555666788888888755..78889***********************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.9E-6696257IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.2E-2698140IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.7E-27208255IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAGFFYLGGR EGQQNKQEEE EEEKQERNLF LYRNEEICNK GFELWPQYYS QQQNLSNYYS  60
FGVGPSRRNP NSVSDNHEPS RSGFALISQA GGLGGGMNCQ DCGNQAKKDC SHLRCRTCCK  120
SRGFQCQTHV KSTWVPAAKR RERQQQLTAL QQQIQPHDQQ HEQDQHQEQQ QQLRGDNPKR  180
QQRDKQLGAA PLACTRIPNT TSGLELGQFP AEVNSPAVFR CVRVSAMEDP DEQYAYQTAV  240
NIGGHVFKGI LYDQGRDDRY TPGGESSSGG DGGGAQHLNL IMGGPTTATT TTTTATTSNP  300
SATLLDPSLY PASLNAFMAG TQFFPPPRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017677.11e-133SHI-related sequence 7, putative
SwissprotQ9LQZ55e-96SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A061FDV11e-133A0A061FDV1_THECC; SHI-related sequence 7, putative
STRINGPOPTR_0002s03000.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-74SHI-related sequence 5